The replay of the COALA WP5 Bioinformatics Workshop, Transcriptomics Analysis Tools for COALA (19 May 2026), is now available.

Organised by Vera Pancaldi and Matthieu Foll for COALA WP5, the workshop featured practical bioinformatics tools and workflows for transcriptomics data analysis, showcasing methods for bulk RNA-seq integration into existing multi-omics classifications, cell type deconvolution analysis, no-code transcriptomics workflows using Galaxy, and RNA-seq applications integrated with spatial analysis.

Program :
•    Lipika Kalson : Integrating your bulk RNAseq datasets into existing multi-omics classifications
•    Marcelo Hurtado : Performing cell type deconvolution analysis using Multideconv
•    Sushant Parab : No-code approaches using Galaxy for transcriptomics data analysis
•    Marcelo Hurtado : Use cases within the COALA network - Application of RNAseq analysis integrated with spatial analysis

•    Discussion points : 
    Applications to pre-clinical models
    Ex vivo human models
    Adapting tools for mouse models
    PDX approaches to separate human and mouse reads

If you have any questions or specific needs about these topics, please do not hesitate to reach out via the “Contact” section of the website.